Use of Non-Natural Amino Acids for the Design and Synthesis of a Selective, Cell-Permeable MALT1 Activity-Based Probe

J Med Chem. 2020 Apr 23;63(8):3996-4004. doi: 10.1021/acs.jmedchem.9b01879. Epub 2020 Apr 9.

Abstract

Constitutive proteolytic activity of MALT1 is associated with highly aggressive B-cell lymphomas. Chemical tools that detect active MALT1 have been reported, but suffer from poor cell permeability and/or cross-reactivity with the cysteine protease cathepsin B. Here, we report that the non-natural amino acid pipecolinic acid in the P2 position of substrates and chemical probes leads to improved selectivity toward MALT1 and results in cell-permeable fluorescent probes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemical synthesis*
  • Amino Acids / metabolism*
  • Amino Acids / pharmacology
  • Cell Line, Tumor
  • Cell Membrane Permeability / drug effects*
  • Cell Membrane Permeability / physiology
  • Drug Design
  • Fluorescent Dyes / chemical synthesis*
  • Fluorescent Dyes / metabolism*
  • Fluorescent Dyes / pharmacology
  • Humans
  • Jurkat Cells
  • Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein / metabolism*
  • Protein Structure, Secondary
  • Protein Structure, Tertiary

Substances

  • Amino Acids
  • Fluorescent Dyes
  • MALT1 protein, human
  • Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein